SubcloneSeeker
1.0.0
Subclone deconvolution software framework
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- a -
addChild() :
SubcloneSeeker::TreeNode
addEvent() :
SubcloneSeeker::EventCluster
addEventCluster() :
SubcloneSeeker::Subclone
allObjectsOfCluster() :
SubcloneSeeker::SomaticEvent
allObjectsOfSubclone() :
SubcloneSeeker::EventCluster
Archivable() :
SubcloneSeeker::Archivable
archiveObjectToDB() :
SubcloneSeeker::Archivable
- b -
bindObjectToStatement() :
SubcloneSeeker::Archivable
,
SubcloneSeeker::EventCluster
,
SubcloneSeeker::SegmentalMutation
,
SubcloneSeeker::SNP
,
SubcloneSeeker::Subclone
- c -
cellFraction() :
SubcloneSeeker::EventCluster
clusterID() :
SubcloneSeeker::SomaticEvent
clustering() :
SubcloneSeeker::EventCluster
createObjectStatementStr() :
SubcloneSeeker::Archivable
,
SubcloneSeeker::EventCluster
,
SubcloneSeeker::SegmentalMutation
,
SubcloneSeeker::SNP
,
SubcloneSeeker::Subclone
createTableInDB() :
SubcloneSeeker::Archivable
createTableStatementStr() :
SubcloneSeeker::Archivable
,
SubcloneSeeker::EventCluster
,
SubcloneSeeker::SomaticEvent
,
SubcloneSeeker::Subclone
- e -
EventCluster() :
SubcloneSeeker::EventCluster
- f -
fraction() :
SubcloneSeeker::Subclone
- g -
GenomicLocation() :
SubcloneSeeker::GenomicLocation
GenomicRange() :
SubcloneSeeker::GenomicRange
getId() :
SubcloneSeeker::Archivable
getInstance() :
RefGenome
getParent() :
SubcloneSeeker::TreeNode
getTableName() :
SubcloneSeeker::Archivable
,
SubcloneSeeker::CNV
,
SubcloneSeeker::EventCluster
,
SubcloneSeeker::LOH
,
SubcloneSeeker::SNP
,
SubcloneSeeker::Subclone
getVecChildren() :
SubcloneSeeker::TreeNode
- i -
isEqualTo() :
SubcloneSeeker::CNV
,
SubcloneSeeker::SomaticEvent
isLeaf() :
SubcloneSeeker::TreeNode
isRoot() :
SubcloneSeeker::TreeNode
isTerminated() :
SubcloneSeeker::TreeTraverseDelegate
- m -
members() :
SubcloneSeeker::EventCluster
- n -
nodesOfParentID() :
SubcloneSeeker::SubcloneLoadTreeTraverser
- o -
operator<() :
SubcloneSeeker::EventCluster
,
SubcloneSeeker::GenomicLocation
operator==() :
SubcloneSeeker::GenomicRange
operator>() :
SubcloneSeeker::EventCluster
,
SubcloneSeeker::GenomicLocation
overlaps() :
SubcloneSeeker::GenomicRange
- p -
PostOrderTraverse() :
SubcloneSeeker::TreeNode
postprocessNode() :
CoexistanceTraverseDelegate
,
SubcloneSeeker::TreeTraverseDelegate
,
TreePrintTraverser
PreOrderTraverse() :
SubcloneSeeker::TreeNode
preprocessNode() :
CoexistanceTraverseDelegate
,
SubcloneSeeker::SubcloneSaveTreeTraverser
,
SubcloneSeeker::TreeTraverseDelegate
,
TreePrintTraverser
processNode() :
CoexistanceTraverseDelegate
,
EdgePrintTraverser
,
NodePrintTraverser
,
SubcloneSeeker::SubcloneLoadTreeTraverser
,
SubcloneSeeker::SubcloneSaveTreeTraverser
,
SubcloneSeeker::TreeTraverseDelegate
,
TreeMergeTraverseSecondary
,
TreePrintTraverser
- q -
queryChromID() :
RefGenome
queryChromLengthWithID() :
RefGenome
queryChromStartBase() :
RefGenome
queryGenomeLength() :
RefGenome
- r -
removeChild() :
SubcloneSeeker::TreeNode
rootNodes() :
SubcloneSeeker::SubcloneLoadTreeTraverser
- s -
SegmentalMutation() :
SubcloneSeeker::SegmentalMutation
selectObjectColumnListStr() :
SubcloneSeeker::Archivable
,
SubcloneSeeker::EventCluster
,
SubcloneSeeker::SegmentalMutation
,
SubcloneSeeker::SNP
,
SubcloneSeeker::Subclone
setCellFraction() :
SubcloneSeeker::EventCluster
setClusterID() :
SubcloneSeeker::SomaticEvent
setFraction() :
SubcloneSeeker::Subclone
setId() :
SubcloneSeeker::Archivable
setParentId() :
SubcloneSeeker::Subclone
setSubcloneID() :
SubcloneSeeker::EventCluster
setTreeFraction() :
SubcloneSeeker::Subclone
SomaticEvent() :
SubcloneSeeker::SomaticEvent
Subclone() :
SubcloneSeeker::Subclone
subcloneID() :
SubcloneSeeker::EventCluster
SubcloneLoadTreeTraverser() :
SubcloneSeeker::SubcloneLoadTreeTraverser
SubcloneSaveTreeTraverser() :
SubcloneSeeker::SubcloneSaveTreeTraverser
- t -
terminate() :
SubcloneSeeker::TreeTraverseDelegate
treeFraction() :
SubcloneSeeker::Subclone
TreeMergeTraverseSecondary() :
TreeMergeTraverseSecondary
TreeNode() :
SubcloneSeeker::TreeNode
TreeTraverseDelegate() :
SubcloneSeeker::TreeTraverseDelegate
- u -
unarchiveObjectFromDB() :
SubcloneSeeker::Archivable
updateObjectFromStatement() :
SubcloneSeeker::Archivable
,
SubcloneSeeker::EventCluster
,
SubcloneSeeker::SegmentalMutation
,
SubcloneSeeker::SNP
,
SubcloneSeeker::Subclone
updateObjectStatementStr() :
SubcloneSeeker::Archivable
,
SubcloneSeeker::EventCluster
,
SubcloneSeeker::SegmentalMutation
,
SubcloneSeeker::SNP
,
SubcloneSeeker::Subclone
- v -
vec_chromIDs() :
RefGenome
vec_chroms() :
RefGenome
vecAllObjectsID() :
SubcloneSeeker::Archivable
vecEventCluster() :
SubcloneSeeker::Subclone
- ~ -
~TreeNode() :
SubcloneSeeker::TreeNode
~TreeTraverseDelegate() :
SubcloneSeeker::TreeTraverseDelegate
Generated on Thu Jul 3 2014 19:31:15 for SubcloneSeeker by
1.8.7