SubcloneSeeker::GenomicRange Class Reference

A segment on a reference genome. More...

#include <GenomicRange.h>

Inheritance diagram for SubcloneSeeker::GenomicRange:

Public Member Functions
	GenomicRange ()
virtual bool	overlaps (GenomicRange &another)
bool	operator== (const GenomicRange &another) const
Public Member Functions inherited from SubcloneSeeker::GenomicLocation
	GenomicLocation ()
virtual bool	operator< (const GenomicLocation &another) const
virtual bool	operator> (const GenomicLocation &another) const

Public Attributes
unsigned long	length
Public Attributes inherited from SubcloneSeeker::GenomicLocation
int	chrom
unsigned long	position

Detailed Description

A segment on a reference genome.

This class represents a segment on a (implied) reference genome. It contains a start position described by GenomicLocation, and a greater than 1 length. In this way a segment will never cross a chromosome boundry.

See also

GenomicLocation

Constructor & Destructor Documentation

SubcloneSeeker::GenomicRange::GenomicRange ( )

inline

minimal constructor to reset all member variables

Member Function Documentation

bool SubcloneSeeker::GenomicRange::operator== ( const GenomicRange &  another ) const

inline

GenomicRange compare operator ==

Parameters

another

The other GenomicRange to compare to

Returns

true if they are equal, false if not

virtual bool SubcloneSeeker::GenomicRange::overlaps ( GenomicRange &  another )

inlinevirtual

Check if two GenomicRange overlap with each other

Parameters

another

The other GenomicRange to check with

Returns

true if overlaps, or false

Member Data Documentation

unsigned long SubcloneSeeker::GenomicRange::length

The length of the segment

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The documentation for this class was generated from the following file:

• src/GenomicRange.h