Loss of Heterozygosity. More...

Inheritance diagram for SubcloneSeeker::LOH:

Protected Member Functions
virtual std::string	getTableName ()

Protected Member Functions inherited from SubcloneSeeker::SegmentalMutation
virtual std::string	createObjectStatementStr ()

virtual std::string	updateObjectStatementStr ()

virtual std::string	selectObjectColumnListStr ()

virtual int	bindObjectToStatement (sqlite3_stmt *)

virtual void	updateObjectFromStatement (sqlite3_stmt *)

Protected Member Functions inherited from SubcloneSeeker::SomaticEvent
virtual std::string	createTableStatementStr ()

Additional Inherited Members
Public Member Functions inherited from SubcloneSeeker::SegmentalMutation
	SegmentalMutation ()

Public Member Functions inherited from SubcloneSeeker::SomaticEvent
	SomaticEvent ()

void	setClusterID (sqlite3_int64 clusterID)

virtual bool	isEqualTo (SomaticEvent *anotherEvent, unsigned long resolution=10000L)

sqlite3_int64	clusterID ()

virtual DBObjectID_vec	allObjectsOfCluster (sqlite3 *database, sqlite3_int64 clusterID)

Public Member Functions inherited from SubcloneSeeker::Archivable
	Archivable ()

sqlite3_int64	getId ()

void	setId (sqlite3_int64 nid)

bool	createTableInDB (sqlite3 *database)

sqlite3_int64	archiveObjectToDB (sqlite3 *database)

bool	unarchiveObjectFromDB (sqlite3 *database, sqlite3_int64 id)

DBObjectID_vec	vecAllObjectsID (sqlite3 *database)

Public Attributes inherited from SubcloneSeeker::SegmentalMutation
GenomicRange	range

Public Attributes inherited from SubcloneSeeker::SomaticEvent
double	frequency

Protected Attributes inherited from SubcloneSeeker::SomaticEvent
sqlite3_int64	ofClusterID

Protected Attributes inherited from SubcloneSeeker::Archivable
sqlite3_int64	id

Detailed Description

Loss of Heterozygosity.

A loss of heterozygosity event is a segment of genome within which both chromosome exhibit the same DNA sequence

Member Function Documentation

std::string LOH::getTableName ( )

protectedvirtual

returns the name of the table in which all object of a specific class are stored

The documentation for this class was generated from the following files: