treeprint.cc File Reference

#include "Archivable.h"
#include "Subclone.h"
#include "EventCluster.h"
#include <sqlite3/sqlite3.h>
#include <iostream>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include <ctype.h>
#include <unistd.h>

Classes
class	TreePrintTraverser
	A tree traverser that prints tree in a text format. More...
class	NodePrintTraverser
	A tree traverser that prints the nodes in Graphviz .dot format. More...
class	EdgePrintTraverser
	A tree traverser that prints the edges in Graphviz .dot format. More...

Enumerations
enum	{ RUN_MODE_LIST, RUN_MODE_PRINT }
enum	{ OUT_FORMAT_TEXT, OUT_FORMAT_GVIZ }

Functions
void	usage (const char *progName)
	Print the usage information. More...
void	listRootIDs (sqlite3 *database)
	List all root subclone IDs. More...
void	printSubcloneWithID (sqlite3 *database, int32_t rootID)
	Print details about a subclone structure The structure contains the given root, and all its descendent nodes. More...
void	printAllSubclones (sqlite3 *database)
	Print all subclone structures. More...
int	main (int argc, char *argv[])

Variables
enum { ... }	runMode
enum { ... }	outputMode
int	isRootIDSpecified
int32_t	rootID

Detailed Description

The source for util 'treeprint', which takes a database and a root id and prints out the subclonal tree

Author

Yi Qiao

Function Documentation

void listRootIDs

(

sqlite3 *

database

)

List all root subclone IDs.

Parameters

database

An live sqlite3 database connection

int main	(	int	argc,
		char *	argv[]
	)

Main function of the treeprint utility

void printAllSubclones

(

sqlite3 *

database

)

Print all subclone structures.

Parameters

database

An live sqlite3 database connection

void printSubcloneWithID	(	sqlite3 *	database,
		int32_t	rootID
	)

Print details about a subclone structure The structure contains the given root, and all its descendent nodes.

Parameters

database	An live sqlite3 database connection
rootID	The id of the root node for which the structure is printed

void usage

(

const char *

progName

)

Print the usage information.

Parameters

progName

the string containing the name of the executable