treemerge_p.h

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/*
The MIT License (MIT)

Copyright (c) 2013 Yi Qiao

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
*/

#ifndef TREEMERGE_P_H
#define TREEMERGE_P_H

#include "SomaticEvent.h"
#include "Subclone.h"

#define BOUNDRY_RESOLUTION 20000000L

using namespace SubcloneSeeker;

SomaticEventPtr_vec nodeEventsList(Subclone * node);

SomaticEventPtr_vec SomaticEventDifference(
        const SomaticEventPtr_vec& master, 
        const SomaticEventPtr_vec& unwanted);

bool eventSetContains(
        const SomaticEventPtr_vec& v_container, 
        const SomaticEventPtr_vec& v_containee);

bool resultSetComparator(const SomaticEventPtr_vec& v1, const SomaticEventPtr_vec &v2);

SomaticEventPtr_vec checkPlacement(
        Subclone *pnode, 
        SomaticEventPtr_vec somaticEvents, 
        bool * placeableOnSubtree,
        int * cp = NULL);

bool TreeMerge(Subclone *p, Subclone *q);
#endif